Hi there,
I found this tutorial: https://www.ncbi.nlm.nih.gov/books/NBK52637/
See this figure:
https://www.ncbi.nlm.nih.gov/books/NBK52637/figure/blast_setup_pc.F5/?report=objectonly
The database refseq_rna.00 is installed correctly
When I do this command:
blastdbcmd -db refseq_rna.00 -entry nm_000249 -outfmt "%f" -out test_query.txt
I get the following error:
Error: [blastdbcmd] Entry not found: NM_000249
Error: [blastdbcmd] Entry or entries not found in BLAST database
Apparantly the entry isn't in refseq_rna.00 anymore? How do I know what entries are in my Blast database?
Are there more detailed tutorials about Blast and command line Blast?
Thanks in advance