Freebayes adjusting parameters to "force" homozygous call
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4.1 years ago
User000 ▴ 690

How to change the freebayes parameters in following situations: Even if there is only one reference allele with a high mapping quality 60 freebayes would result in a 0/1 call. For me this could be an alternative allele. Any suggestions? image here

freebayes variant calling • 740 views
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