accessing files in shared directories while software installed with conda
0
0
Entering edit mode
14 months ago
kzkedzierska ▴ 160

Hiya!

Is there a smart way of accessing the files in the bin directory of the soft installed via conda?

I am writing snakemake pipeline in which I rely on conda. In one of the rules, I need to run vardict followed by two scripts (namely teststrandbias.R and var2vcf.pl) which are to be found in the share/vardict-VERSION/. How can I reference those?

I'll be very grateful for advice!

conda vardict snakemake • 307 views
ADD COMMENT
0
Entering edit mode
dirname `which vardict` ?
ADD REPLY

Login before adding your answer.

Traffic: 1605 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6