Entering edit mode
4.1 years ago
nastasia
▴
10
Hello everyone,
I am working with genotype GWAS dataset which contains heterogeneous populations. I tested EIGENSTRAT software which correct for population stratification including PCA via two steps (smartpca and smarteigentrat).
The output file contains chisq statistic for each SNP as following:
Chisq EIGENSTRAT
1.2298 1.2695
1.2298 1.2695
1.6492 1.6652
1.2298 1.2695
1.0893 1.1060
0.9506 0.9554
0.9506 0.9554
2.9808 2.9909
2.9723 3.0327
1.8844 1.9356
... ....
How can I calculate the new corrected p values from these output?
Thank you