How to construct the phylogenetic tree of the whole genus?
1
0
Entering edit mode
2.2 years ago

Hi guys, I am confused about how to construct the phylogenetic tree of the streptomyces genus. The taxonomy of
streptomyces genus is mostly based on the MLST method, but now I need to use the gene data from NCBI to construct the phylogenetic tree of the streptomyces genus. Should I use the whole gene of the MLST's housekeeping gene to construct the tree? Or I should just use the loci to build the tree? Or the other method? I am a junior in university, have little knowledge of the filed., but my tutor asked me to do that. plus: Sorry for my awkward expression~

genome • 702 views
ADD COMMENT
0
Entering edit mode

Dear, zhou03091010 I am also interested in that approach, would you share your progress?

ADD REPLY
1
Entering edit mode
2.2 years ago
AsoInfo ▴ 300

MEGA software can construct phylogenetic trees using sequences.

https://www.megasoftware.net/

ADD COMMENT
0
Entering edit mode

Thanks ~ I've known that MLST is used for ONLY taxonomy and I'll try to build the core gene tree of the streptomyces genus~

ADD REPLY

Login before adding your answer.

Traffic: 1356 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6