Question: How to construct the phylogenetic tree of the whole genus?
0
gravatar for zhou03091010
7 months ago by
zhou030910100 wrote:

Hi guys, I am confused about how to construct the phylogenetic tree of the streptomyces genus. The taxonomy of
streptomyces genus is mostly based on the MLST method, but now I need to use the gene data from NCBI to construct the phylogenetic tree of the streptomyces genus. Should I use the whole gene of the MLST's housekeeping gene to construct the tree? Or I should just use the loci to build the tree? Or the other method? I am a junior in university, have little knowledge of the filed., but my tutor asked me to do that. plus: Sorry for my awkward expression~

genome • 276 views
ADD COMMENTlink modified 6 weeks ago by fconstancias0 • written 7 months ago by zhou030910100

Dear, zhou03091010 I am also interested in that approach, would you share your progress?

ADD REPLYlink written 6 weeks ago by fconstancias0
1
gravatar for AsoInfo
7 months ago by
AsoInfo300
Bonn, Germany
AsoInfo300 wrote:

MEGA software can construct phylogenetic trees using sequences.

https://www.megasoftware.net/

ADD COMMENTlink written 7 months ago by AsoInfo300

Thanks ~ I've known that MLST is used for ONLY taxonomy and I'll try to build the core gene tree of the streptomyces genus~

ADD REPLYlink written 7 months ago by zhou030910100
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 858 users visited in the last hour