Hello everyone, I have transcription factor chip seq bed files data for multiple transcription factors. I'd like to extract TF motifs positions for every read, so i first narrowed the chip seq peaks to include only 30 bases around the peak center. Ideally I need to extract the exact positions of the TF binding, so I thought I could use MEMEchip for identifying the motifs but I didn't get a motif or positions. My question is first what algorithm\program should I use and how, and if it's indeed MEMEchip, what parameters I should use and how. Thank you for your help!
Question: Using MEMEChip for finding transcription factor binding sites motifs
12 weeks ago by
may6343 • 0
may6343 • 0 wrote:
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