Question: ChipQC doesn't run
0
gravatar for francesca3
11 months ago by
francesca330
francesca330 wrote:

Hi everyone, I'm having troubles with ChipQC.

I load the samplesheet and I try to run the ChIPQC function but several errors appears:

chipObj<-ChIPQC(samples, annotation="mm9")

Bam file has 22 contigs
Error: BiocParallel errors
  element index: 1, 2, 3
  first error: don't find the function "seqlevels<-"
 Warning messages:
1: In serialize(data, node$con) :
  'package:stats' could not be available during the loading

Anyone can help?

Thanks
Francesca

chip-seq • 601 views
ADD COMMENTlink modified 11 months ago by Ram32k • written 11 months ago by francesca330
3
gravatar for francesca3
11 months ago by
francesca330
francesca330 wrote:

I found the problem. There is a bug when the package is used from PC. It needs to launch this command register(SerialParam()) before launching the CHIPQC command

Thanks

ADD COMMENTlink written 11 months ago by francesca330
1

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ADD REPLYlink written 5 months ago by psm50
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