ChipQC doesn't run
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2.2 years ago
francesca3 ▴ 70

Hi everyone, I'm having troubles with ChipQC.

I load the samplesheet and I try to run the ChIPQC function but several errors appears:

chipObj<-ChIPQC(samples, annotation="mm9")

Bam file has 22 contigs
Error: BiocParallel errors
  element index: 1, 2, 3
  first error: don't find the function "seqlevels<-"
 Warning messages:
1: In serialize(data, node$con) :
  'package:stats' could not be available during the loading

Anyone can help?

Thanks
Francesca

ChIP-Seq • 1.4k views
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2.2 years ago
francesca3 ▴ 70

I found the problem. There is a bug when the package is used from PC. It needs to launch this command register(SerialParam()) before launching the CHIPQC command

Thanks

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Worked for me as well!

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