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• How comparable is MeDIP-Seq with RRBS/WGBS?
  How comparable are MeDIP and RRBS/WGBS data? If I do both MeDIP and RRBS on the same samples, sh...
• Convert MEDIP-seq RMS values into AMS using MEDIP
  Does anyone know how to convert MEDIP-seq RMS(raw methylation score) values into AMS? I looked in...
• tools for alignment and methylation extraction for MeDIP sequencing
  For methylation study in cancer, we have MeDIP-seq data. What are all tools that we can use for a...
• sva correction for MEDIPS
  Dear great helpers, As mentioned in the post title, can surrogate variable (sva) batch correctio...
• Comparison of MeDIP data with transcriptomics expression data
  Hello All, I wanted to compare the methylation data with expression data. Can I compare the meth...
• Question About Medip Methylation Array
  We ran Agilent Medip Array for methylation we ran Batman to call methylation but I am stuck with ...
• How To Modify The Charm R Program For Medip-Chip Dna Methylation Arrays?
  I am using NimbleGen 3x720K CpG Island plus RefSeq promoter DNA methylation arrays which uses a c...
• Error when running MEDIPS
  Dear all, I was running MEDIPS. I use the following command lines. But error occurs, which is sh...
• Agilent Medip And Mat Algorithm For Enrichment
  I have agilent MEdip data and am planning to use MAT algorithm for calling enriched regions. I ha...
• Peak calling on MeDIP data
  Hi All, I have MeDIP data in the form of Bowtie BAM files. I would like to determine the regions ...
• How to compare methylation array data with methylation MeDip-seq data?
  Hello, I wanted to compare the methylation data generated in a study by both 450k array and MeDi...
• MEDIPS bioconductor package "uniq" option
  Hi I am analysing a MBD-seq data in which I have to compare the data across species. I was going...
• How do I find out regions of methylation enrichment using MEDIPS bioconductor package?
  I have a single MEDIP-seq sample and I am only interested in finding out regions of methylation....
• Using CEAS with canine methylation data
  Hi , I am working on Dog genome MEDIP-seq DNA methylation data.I came across CEAS (http://liulab...