Download all isoforms

0

Entering edit mode

4.1 years ago

BDK_compbio ▴ 140

I want to collect all isoforms of all genes (Fasta/Fastq file of nucleotide and protein sequences) of Arabidopsis. I am wondering if there is a straightforward way to download the file from any database.

isoform sequence • 915 views

ADD COMMENT • link 4.1 years ago by BDK_compbio ▴ 140

0

Entering edit mode

What have you tried?

ADD REPLY • link 4.1 years ago by Ram 43k

0

Entering edit mode

I downloaded the pep.fasta and cdna.fasta from here. For some other organisms, I am getting sequences from Uniport->Components->Downloads->FASTA format(canonical and isoform). Am I doing it right?

ADD REPLY • link 4.1 years ago by BDK_compbio ▴ 140

0

Entering edit mode

How about getting them from NCBI?

Transcripts
Proteins

ADD REPLY • link 4.1 years ago by GenoMax 141k

0

Entering edit mode

Thanks !! I tried to download from TAIR and Uniport database (as replied to an earlier comment). I hope I am on right track.

ADD REPLY • link 4.1 years ago by BDK_compbio ▴ 140

Login before adding your answer.