If I have a list of gene, is there anyway (software, algorithm?) I can identify the TF binding motif for each gene?
-Objective: find TF motif for each gene
-meaning of "TF motif for gene": the regions which bind by TF to regulate the gene expression; those regions could be in the promoter or enhancer
-what I have found: I just start to read FIMO, not sure if it is the right direction.