Entering edit mode
4.0 years ago
lkianmehr
▴
100
I have some questions:
1- can I seek for tRNA-derived fragments or generally small coding and non-coding RNA on RNA-seq data?
2- if so, is Salmon useful for this purpose?
thank you
I doubt that you will get reliable information from that in standard RNA-seq. The polyA-enrichment that is routinely done does not capture these transcripts since they are not polyadenylated.