recovery ribosomal 16S
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2.6 years ago

how i can recover the 16S from a set of FASTA files. is there any script or utility that does that and thanks in advance

genome • 387 views
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What's your input? shotgun metagenomics? 16S amplicon?

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input : scaffold.fasta not metagenomicx yes for 16S

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What did you assemble and how? You can annotate it with prokka and get the rRNA but the reliability depends on the assmebly

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2.6 years ago
h.mon 34k

Have a look at Barrnap and RNAmmer.

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