Transferring Phase information from one VCF to another
1
0
Entering edit mode
19 months ago
ma17 ▴ 10

Hi,

I have two different VCFs, one with statistically phased data and the other with experimentally phased data. They have the same exact variants and samples.

The statistically phased VCF has no missing data and all variants are phased, while the experimentally phased data has some missing data, and some variants are unphased.

For sites that are missing or unphased in the experimentally phased data, I am trying to transfer the genotype and phase information from the statistically phased VCF. Is there a way to do this?

Thanks

Phasing VCF • 370 views
ADD COMMENT
1
Entering edit mode
19 months ago

Have a look at WhatsHap!

ADD COMMENT

Login before adding your answer.

Traffic: 2095 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6