Entering edit mode
4.1 years ago
Fid_o
▴
40
Greetings,
I have a group of sequences from bacterial genome which I want to separate into lineage-sublineage. I have reference genome for the parent lineage and a reference genome for the sublineage. These are separated by differences in SNPs. What good software or code would I use to pull out the lineages from the pool of sequences I have?
Regards.
For defined genes, MEGA would be an easy option. There are plenty of other programs (phylip, PAUP etc).