Entering edit mode
4.6 years ago
11818480
•
0
Hello everyone,
I am using R package GEOquery to get a geo object from file ( in my directory) by getgeo function. I already download the required packages
BiocManager::install("DESeq2")
BiocManager::install("limma")
BiocManager::install("GEOquery")
library(DESeq2)
library(limma)
library(Biobase)
library(GEOquery)
I used this code and get this message
getGEO("GPL96.annot.txt.gz")
Using locally cached version of GPL96.ANNOT.TXT.GZ found here:
C:\Users\MTECH~1\AppData\Local\Temp\RtmpsHinCo/GPL96.ANNOT.TXT.GZ.soft
Error in parseGSEMatrix(fname, destdir = destdir, AnnotGPL = AnnotGPL, :
parsing failed--expected only one '!series_data_table_begin'
could anyone help me because I am beginner in R , please ?
Can you try:
is this problem be solved?