adopt last KEGG database to do pathway enrichment in humman2
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13 months ago
zhangdengwei ▴ 140

hi all,

I'm dealing with the metagenomic data using humann2, to perform pathway enrichment. And the default database is metaCyc for pathway enrichment in humann2. According to its official tutorial, only humann1 adopts kegg database since the kegg was no longer free. So the last free version of KEGG's gene annotation databases (v56) is available for humann2. However, if I'd like to use the last kegg database instead of either old version or metaCyc, what can I do? Thanks for your advice.

Regards!

humann2 kegg • 416 views
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Hi! I am also dealing with this. Have you found solution?

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