extract .gff files from prokka outputs
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2.8 years ago

I need a comment line to extract .gff files from several prokka result folders. infiniment goods

genome prokka • 1.4k views
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To clarify: you want to get only the gffs from a bunch of prokka output folders?

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yes yes exactly the same question

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Assuming all your prokka directories are subfolders of the same root (e.g. root/prokka1, root/prokka2, ...) and you want to copy the gffs into a folder /path/to/gff:

cp root/*/*.gff /path/to/gff/
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It's walking, thank you very much.

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