Hi guys, maybe someone already asked the same but I looked around without success. I have a list of bam files resulting from bwa-mem. I would like to extract the list of scores (quality) of each bam in order to look at the quality of each sample (in order to do some statistics). I also would like to know the min and max of the scores for each bam. I tried to use samtools pileup but it generates a file with a lot of information I do not want and also I don't know how to extract the list of scores. Can anyone help me please?
Thank you in advance