I have a validated GFF3 with an embedded fasta. I want to be able to browse this new annotation by scaffold. Currently I have been using APOLLO and chopping out the scaffolds I need to look at (gene hunting). I find this to be tedious and annoying.
People have mentioned that IGV can take a whole genome GFF3 Other thread. When I have tried to index the GFF3 with IGV it sucks up all my ram and I have to abort. I can play DOOM3 on my macbook, but browsing a genome is too much to ask for?
What do I need to do to get this working?