Tool for translating chromosomal location to gene name (for human)
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20 months ago
haasroni • 0

Hello,

Can anyone recommend a good tool for translating a list of chromosomal locations to gene names

For example:

chr1 2000 -> <gene_name1>

chr2 2008880 -> <gene_name2>

Thanks! Roni

gene genome • 595 views
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Entering edit mode
20 months ago
Carambakaracho ★ 2.8k

Based on the assumption your reference would be the human genome, the Ensembl variant effect predictor would be an option

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20 months ago

For a small data set, try Ensembl's biomart otherwise, you can also do it using the Ensembl perl API.

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