Question: MOTHUR command "chimera.vsearch"
gravatar for dpc
5 months ago by
dpc140 wrote:

Hi there!!! Can you please explain how MOTHUR finds the chimeric sequence from a "fasta" file when used with "count_table" file. command:

mothur > chimera.vsearch(fasta=stool.trim.unique.good.align, count=stool.trim.good.count_table)

I mean how is it possible to find the chimeric sequence without a reference. Just want to know what is the procedure that runs at the "back end"

Thank You

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