Hey friends! I have a large number of fastq files of COVID-19 from GridION sequencing, I want to produce FASTA files of the assembly results. because the size of the reads is large (about 800-1200 bases) TRINITY didn't work well for me. what other tools can I use to assembly these files??
BTW: I was able to produce BAM sorted files using MINIMAP2 but I need the assembly results.
thank you for your help