Question: How to find mirna target genes?
0
gravatar for top5
12 weeks ago by
top510
top510 wrote:

Hello, I have DE miRNAs and i am trying to find target genes and i couldn't find a R package by using reference genome the most of the packages take species from tools that is already online. Could you please help me about it?

rna-seq next-gen R gene • 138 views
ADD COMMENTlink modified 11 weeks ago • written 12 weeks ago by top510

You can try miRanda as it requires only the RNA sequences and a genome fasta file.

http://cbio.mskcc.org/microrna_data/manual.html

ADD REPLYlink written 12 weeks ago by ATpoint36k

i think it is not working or i could not find the way , actually i just want to find prediction. i would be appreciate if you could help me about it...

ADD REPLYlink modified 11 weeks ago • written 12 weeks ago by top510

There is a version at conda you can use I guess. https://anaconda.org/bioconda/miranda

ADD REPLYlink written 12 weeks ago by ATpoint36k

Thank you so much, i will definitely try it.

ADD REPLYlink written 12 weeks ago by top510
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