Entering edit mode
4.0 years ago
dr.goutham
•
0
How to sort the TCGA dataset based on the expression of a panel of genes? What is the best parameter to consider (z-score or log values)? I would like to sort the TCGA breast cancer dataset based on the expression of a panel of genes (let's say 22 genes related to the inflammatory response) on cBioportal to classify them as inflammatory-high and inflammatory-low. Further, I would like to analyze the expression levels of gene of interest (for example VEGFA) among the inflammatory-high and inflammatory-low subgroups. Any help would be highly appreciated... Thank you,
