Question: How to sort the TCGA dataset based on expression of a panel of genes?
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6 months ago by
dr.goutham0
dr.goutham0 wrote:

How to sort the TCGA dataset based on the expression of a panel of genes? What is the best parameter to consider (z-score or log values)? I would like to sort the TCGA breast cancer dataset based on the expression of a panel of genes (let's say 22 genes related to the inflammatory response) on cBioportal to classify them as inflammatory-high and inflammatory-low. Further, I would like to analyze the expression levels of gene of interest (for example VEGFA) among the inflammatory-high and inflammatory-low subgroups. Any help would be highly appreciated... Thank you,

rna-seq • 146 views
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