Question: Cell line RNA differentially expression gene
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gravatar for 9521ljh
9 months ago by
9521ljh40
9521ljh40 wrote:

i want to find the differential expressed gene of "RD" Cell line.

ex) MYOD1 is highly expressed in RD. this is known at some paper.

However, searching paper for find which gene is highly,lowly expressed is too exhausting.

Thus , i want to find some database for reference RD cell line expression. is it exit??

rna-seq • 208 views
ADD COMMENTlink modified 9 months ago by Kevin Blighe69k • written 9 months ago by 9521ljh40
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gravatar for Kevin Blighe
9 months ago by
Kevin Blighe69k
Republic of Ireland
Kevin Blighe69k wrote:

Hi, you must mean RD, as in, ACH-000169, a rhabdomyosarcoma cell-line?

It was profiled by the CCLE (Cancer Cell Line Encyclopedia). You will have to register an account in order to utilise their data: https://portals.broadinstitute.org/ccle

DepMap also has an accession page for it: https://depmap.org/portal/cell_line/ACH-000169

Kevin

ADD COMMENTlink modified 9 months ago • written 9 months ago by Kevin Blighe69k
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