Question: Run Cellranger Count with Novogene fastq files
8 weeks ago by
swbarnes2 ♦ 7.8k
swbarnes2 ♦ 7.8k wrote:
Cellranger is very fussy about the names of the fastqs. They have to be just as mkfastq or bcl2fastq would name them, and yours are not right.. They need to be in the form of "mysample_S1_L001_I1_001.fastq.gz"
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