I would like to measure the similarity among set of operons from different species. Is there a well-known method for this? If you can suggest me some good articles addressing this problem, I will be thankful to you.
Take a look at sibelia.
Hi, please try GeneGrouper
It will look for all gene clusters in a set of genomes that contain a gene of interest. It will then show how similar those gene clusters are between taxa.
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