ncRNA Blast on ensembl

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4.0 years ago

m.seymaozturk • 0

Hi everybody,

I am senior student and I really need help to complete one of assignment which is about finding 5 ncRNA queries homologues in all plant genome. My supervisor suggest me to do that on https://plants.ensembl.org/index.html and show output on table with this information:

d of the query sequence (the symbols after the > sign) / Species name / Chromosome identification / Matching strand / Coordinates (start and stop)

Can you help me please?

blast ncRNA ENSEMBL Plants ensembl plants • 648 views

ADD COMMENT • link 4.0 years ago by m.seymaozturk • 0

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Go to the blast tool page at link above and do the searches you need. Be sure to choose ncRNA genes as the database under "DNA databases" drop down to search against.

ADD REPLY • link 4.0 years ago by GenoMax 141k

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There is two problem: 1- I would like to do this for all plant genome ,but 25 database limits block it. 2- After my blast search how can I get all the result?

ADD REPLY • link 4.0 years ago by m.seymaozturk • 0

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