Tophat : Coverage-Search

Question

[Nicolas Rosewick]

Hi,

In tophat, what is the signification of the --coverage-search parameter ?

In tophat manual :

--coverage-search Enables the coverage based search for junctions. Use when coverage search is disabled by default (such as for reads 75bp or longer), for maximum sensitivity

Thanks,

N.

Answer 1

[Nicolas Rosewick]

nobody knows ?

Answer 2

[galka8]

Had this question as well, and I haven't even been able to google it! :(((