snpEff and SIFT calculation
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Entering edit mode
12 months ago
misterie ▴ 90

Hi,

I annotated my VCF files using snpEff by creating new database (I use own assembly and gtf file). I would like also to calculate SIFT (prediction of consequence in missense variant). I found, that I can do this using snpSift, but I see that I need to use dbNSFP that is dedicated for human genome... How can I calculate sift for my variants (VCF) using my own assembly and gff?

Thank you!

snpEff sift • 330 views
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