Question: Getting centimorgan map units for 1000 Genomes data
0
gravatar for devenvyas
7 months ago by
devenvyas650
Stony Brook
devenvyas650 wrote:

I have imputed VCFs, which I imputed using Beagle for 1000G reference sites (http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase3_v5a/). From these, I have a bed/bim/fam file that I made using plink19 --vcf FILENAME --make-bed --out.

The resulting bim file has no map units, which I need for an IBD analysis. Anyone know where I can get map units for the variants in the phase 3 reference panel?

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ADD COMMENTlink modified 7 months ago by Kevin Blighe67k • written 7 months ago by devenvyas650
0
gravatar for Kevin Blighe
7 months ago by
Kevin Blighe67k
Republic of Ireland
Kevin Blighe67k wrote:

I presume that you mean the genetic map data, which is available from here:

I also saved these 1000 Genomes Phase III reference files in my personal online storage... for fear that they vanish from the WWW.

Kevin

ADD COMMENTlink modified 7 months ago • written 7 months ago by Kevin Blighe67k
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