query coverage parameter in blastn
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14 months ago
agata ▴ 10

Hello,

In online version of blastn as a default result is available "Percent Query Coverage".

How I may obtain the same column in stand-alone blastn from blast+?

I found that with outfmt parameter I may specify some additional outputs, but I do not know which from those three arguments, listed in manual, corresponds to "Percent Query Coverage" from online version.

qcovs
qcovhsp
qcovus

https://www.ncbi.nlm.nih.gov/books/NBK279684/

NCBI blast+ blastn • 592 views
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qcovs will be similar as the online blast

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