Correlation Between Tags On The Sense And Antisense Strand?

Question

[KCC]

Is there any software that yields the cross-correlation between the sense and antisense strand of tag data in wiggle or bedgraph format?

Answer 1

[KCC]

I'll answer my own question here. Homer does this: http://biowhat.ucsd.edu/homer/chipseq/qc.html#Sequencing_Fragment_Length_Estimation

[Istvan Albert]

thanks for following up