Question: Imputing missing genetic map distances from a bim file
0
gravatar for devenvyas
5 months ago by
devenvyas650
Stony Brook
devenvyas650 wrote:

I have a Plink dataset with 7.1 millions biallelic SNPs (which are in 1000G phase 3). I was able to recover genetic map distances for 2.5 million, but not for the rest.

I was wondering, is there a way I can get Plink or any other piece of software to impute the missing map distances?

centimorgan snp plink • 179 views
ADD COMMENTlink modified 4 days ago by shenzhongjun0 • written 5 months ago by devenvyas650
0
gravatar for shenzhongjun
4 days ago by
shenzhongjun0 wrote:

I hope this answer by chrchang523 is useful to you Calculating genetic distance from VCF to MAP format

ADD COMMENTlink written 4 days ago by shenzhongjun0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1513 users visited in the last hour