Question: Imputing missing genetic map distances from a bim file
gravatar for devenvyas
5 months ago by
Stony Brook
devenvyas650 wrote:

I have a Plink dataset with 7.1 millions biallelic SNPs (which are in 1000G phase 3). I was able to recover genetic map distances for 2.5 million, but not for the rest.

I was wondering, is there a way I can get Plink or any other piece of software to impute the missing map distances?

centimorgan snp plink • 179 views
ADD COMMENTlink modified 4 days ago by shenzhongjun0 • written 5 months ago by devenvyas650
gravatar for shenzhongjun
4 days ago by
shenzhongjun0 wrote:

I hope this answer by chrchang523 is useful to you Calculating genetic distance from VCF to MAP format

ADD COMMENTlink written 4 days ago by shenzhongjun0
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