I am using code from a GitHub Snakemake repository to perform RNA-seq anlaysis on a cluster computer.
The following error is giving after submission to the error:
"KeyError in line 7 of /rna_seq_snakemake-master/rna_seq_snakemake-master/rna_seq.snakefile: 'species' File "/rna_seq_snakemake-master/rna_seq_snakemake-master/rna_seq.snakefile", line 7, in <module>
The code for the
import pandas as pd import os import subprocess configfile: "config/config.yaml" include: "rules/helpers.py" SPECIES_VERSION = get_species_version(config['species']) The code for the config.yaml file where species is indicated: # end_type: pe # readLen: 50 # # #mouse or human # species: "mouse" # feature_counts_strand_info: "-s 2"
Can anyone advise please?
Thanks in advance