The AGP format is defined here on the NCBI site. But I've searched high and low, and can't find out what the acronym stands for.
AGP stands for 'A Golden Path', "A Golden Path is a description of the assembly of an object, e.g. a chromosome, by listing all its components (clones) in order whilst specifying exact coordinates" (from http://www.sanger.ac.uk/Projects/D_rerio/explain_tpf_agp.shtml).
see also these links:
Oh, how poetic! Thanks a lot for the answer.
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