PSORTb standalone version does not work...
Entering edit mode
3.4 years ago
mbmember • 0


I am new in the command line but I have been trying to install and run PSORTb without success... The reason is that I would like to input quite a big number of proteins and get all the data together so the online version is not so practical.

I think I have followed the instructions online but I get this message:

------------ EXCEPTION: Bio::Root::Exception -------------
MSG: Failed to load module SVMLoc: Can't load '/home/panagouras3/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/auto/Bio/Tools/PSort/SVMLoc/' for module Bio::Tools::PSort::SVMLoc: /usr/lib/x86_64-linux-gnu/ undefined symbol: svm_predict at /usr/lib/x86_64-linux-gnu/perl/5.26/ line 187.
  at /home/panagouras3/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Tools/PSort/Module/ line 6.
Compilation failed in require at /home/panagouras3/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Tools/PSort/Module/ line 6.
BEGIN failed--compilation aborted at /home/panagouras3/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Tools/PSort/Module/ line 6.
Compilation failed in require at (eval 17) line 1.

STACK: Error::throw
STACK: Bio::Root::Root::throw /home/panagouras3/perl5/lib/perl5/Bio/Root/
STACK: Bio::Tools::PSort::install /home/panagouras3/perl5/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Tools/
STACK: /usr/bin/psort:270

I would very much appreciate your input!

Thanks :)

Subcellular-localization PSORT • 979 views

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