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• OMA standalone error
  I am trying to run OMA as a standalone program with Espirit enabled. I get the following error me...
• OMA standalone:"Error, (in ReadFastaWithNames) length(seqs) = length(refs), assertion failed"
  Hi I used OMA standalone to identify orthologs in two fasta files with aa sequences. When I ran t...
• Error when running oma-standalone v1.0.6: Error, (in RangeOfChunk_iterator) sequence 2 is too long
  Dear all I am trying to run OMA standalone on a set of primate genomes, using DNA sequences inst...
• OMA WARNING: took too long (>1200 sec) to find clusters
  Hi all, I am running OMA standalone in a large set of transcriptomes. It finished the all-all st...
• OMA standalone, "-c" to just convert the databases AFTER all vs all
  After my ALL vs ALL parallelized job (on SLURM), I run OMA 2.1.1 with a single processor and I go...
• OMA cannot evaluate boolean
  Hi! I am trying to run OMA standalone on a two proteome test set. All parameters are left to def...
• OMA Error code
  Hello, I am trying to run OMA standalone on a mac. I have run into the following error: curl: (6)...
• Best way running OMA using SLURM
  Hi everyone, I'm executing OMA through a cluster using a bash script mentioned in the documentati...
• Details of OMA Running Process - OMA standalone
  Hi,  For the standalone version, can you answer the following please:  1.  How does OMA deal wi...
• OMA error in reading the all-against-all files
  Hi there, I am having a problem with OMA not being able to read files. The error message is: ...
• OMA Standalone: "could not read the right number of characters"
  I'm trying to run OMA Standalone (version 2.2.0, darwin x64) on a few nucleotide FASTAs. It creat...
• can standalone OMA be used on protein fasta (not genome)
  Hi, I have a group of proteins that I want to analyse if they are related, do you know if OMA ca...
• OMA parameter error Message
  Hii, I want to use OMA to identify orthologs in multi species using CDS sequences(DNA), Iam jus...
• Errors attempting to start OMA job on SLURM-managed cluster
  Hi, I'm trying to run OMA on a cluster that is managed with SLURM. I've used this cluster before...
• OMA orthology. Error, (in RemoveSpaces) can only assign a character
  Hello dear BioStar community, I have an error I can't figure out when I am trying to use the so...
• OMA, Error in PropagateFunctionByGroup, invalid arguments in intersect (Mac OS)
  Hello, my first try on running OMA standalone on just two genomes randomly downloaded from 'OMA--...
• Is it possible to run the GETHOGs algorithm on already computed pairs of orthologs from OMA?
  Dear community, I've downloaded all pairs of orthologs (oma-pairs.txt file) from the OMA website...
• [OMA] When input sequence data are DNA, OMA conversion in AA ?
  Hello, I'm actually using [OMA][1] with this parameter: - " \# Type of input sequence data, h...
• OMA, GOdata/Wget error
  I am having an issue trying oma with the "ToyExample" on my server. I get the errors WARNING: ...
• Mismatch between gene IDs in Map-SeqNum-ID.txt and HierarchicalGroups.orthoxml
  Hi there, Thanks so much for all of your help so far. I recently completed a successful OMA stan...