Graphing NGS data
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15 months ago
n.joshi17 • 0

I have Illumina reads from my NGS samples and I mapped them to a reference genome. Now I have mapped reads per chromosome and coverage data. How do I plot all chromosome coverage as one graph? i.e. a genome-wide coverage? Also, How can I plot coverage from multiple samples per chromosome on the same graph such that y-axis is the same? I am a beginner at NGS analysis.

sequencing • 351 views
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Entering edit mode
15 months ago
GenoMax 104k

Look at Qualimap to begin with for individual samples. MultiQC can then be used to aggregate multiple samples analyzed by Qualimap.

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