Question: Graphing NGS data
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gravatar for n.joshi17
3 months ago by
n.joshi170
n.joshi170 wrote:

I have Illumina reads from my NGS samples and I mapped them to a reference genome. Now I have mapped reads per chromosome and coverage data. How do I plot all chromosome coverage as one graph? i.e. a genome-wide coverage? Also, How can I plot coverage from multiple samples per chromosome on the same graph such that y-axis is the same? I am a beginner at NGS analysis.

sequencing • 137 views
ADD COMMENTlink modified 3 months ago by genomax87k • written 3 months ago by n.joshi170
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gravatar for genomax
3 months ago by
genomax87k
United States
genomax87k wrote:

Look at Qualimap to begin with for individual samples. MultiQC can then be used to aggregate multiple samples analyzed by Qualimap.

ADD COMMENTlink written 3 months ago by genomax87k
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