Question: Free Alternatives To Pipeline Pilot
3
gravatar for Flow
8.9 years ago by
Flow1.5k
Flow1.5k wrote:

I got some Pipeline Pilot 8.0 protocols and I wonder if there is some open source or free alternative where I could use them

workflow open pipeline • 6.9k views
ADD COMMENTlink modified 2.2 years ago by Biostar ♦♦ 20 • written 8.9 years ago by Flow1.5k
2

it would be easier to answer if you can explain what Pipeline Pilot exactly is and what are you using it for.

ADD REPLYlink written 8.9 years ago by Giovanni M Dall'Olio26k
9
gravatar for Pierre Lindenbaum
8.9 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

Some workflow engines in my bookmarks:

EDIT: another one published today: https://conveyor.cebitec.uni-bielefeld.de/Home/About

ADD COMMENTlink modified 10 weeks ago by RamRS24k • written 8.9 years ago by Pierre Lindenbaum124k
4

While not in exactly the same class, there is also Galaxy (http://main.g2.bx.psu.edu/).

ADD REPLYlink written 8.9 years ago by Sean Davis25k

thanks for the answer. can any of them import or use somehow pipeline pilot protocols/components?

ADD REPLYlink written 8.9 years ago by Flow1.5k
2
gravatar for Egon Willighagen
8.9 years ago by
Maastricht
Egon Willighagen5.2k wrote:

There is also Cyrille2 aimed at genome sequence data annotation workflows.

ADD COMMENTlink written 8.9 years ago by Egon Willighagen5.2k
1
gravatar for Andra Waagmeester
8.6 years ago by
Maastricht, the Netherlands
Andra Waagmeester3.2k wrote:

I don't know pipeline pilot, but I am missing GenePattern from the list of already mentioned workflow systems

ADD COMMENTlink written 8.6 years ago by Andra Waagmeester3.2k
0
gravatar for christian.miles
4.9 years ago by
India
christian.miles0 wrote:

 

 

ADD COMMENTlink modified 4.9 years ago • written 4.9 years ago by christian.miles0
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