Question: Free Alternatives To Pipeline Pilot
gravatar for Flow
9.8 years ago by
Flow1.5k wrote:

I got some Pipeline Pilot 8.0 protocols and I wonder if there is some open source or free alternative where I could use them

workflow open pipeline • 7.5k views
ADD COMMENTlink modified 3.1 years ago by Biostar ♦♦ 20 • written 9.8 years ago by Flow1.5k

it would be easier to answer if you can explain what Pipeline Pilot exactly is and what are you using it for.

ADD REPLYlink written 9.8 years ago by Giovanni M Dall'Olio27k
gravatar for Pierre Lindenbaum
9.8 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum130k wrote:

Some workflow engines in my bookmarks:

EDIT: another one published today:

ADD COMMENTlink modified 13 months ago by RamRS30k • written 9.8 years ago by Pierre Lindenbaum130k

While not in exactly the same class, there is also Galaxy (

ADD REPLYlink written 9.8 years ago by Sean Davis26k

thanks for the answer. can any of them import or use somehow pipeline pilot protocols/components?

ADD REPLYlink written 9.8 years ago by Flow1.5k
gravatar for Egon Willighagen
9.8 years ago by
Egon Willighagen5.2k wrote:

There is also Cyrille2 aimed at genome sequence data annotation workflows.

ADD COMMENTlink written 9.8 years ago by Egon Willighagen5.2k
gravatar for Andra Waagmeester
9.5 years ago by
Maastricht, the Netherlands
Andra Waagmeester3.2k wrote:

I don't know pipeline pilot, but I am missing GenePattern from the list of already mentioned workflow systems

ADD COMMENTlink written 9.5 years ago by Andra Waagmeester3.2k
gravatar for christian.miles
5.8 years ago by
christian.miles0 wrote:



ADD COMMENTlink modified 5.8 years ago • written 5.8 years ago by christian.miles0
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