Enrichment Analysis for Proteins

Question

[trumbia]

Hello,

I am new at bioinformatics and still trying to learn enrichment analysis. I have list of enzyme id(protein id) and their pathway information I would like to ask that what kind of enrichment analysis I can conduct? Is it possible to analysis how over-represented those enzyme and substrate in different pathway? How does the result look like? Do you recommend any tutorial for me? Thank you so much.

[N15]

I like clusterProfiler (R) for clustering based on KEGG pathway:

https://yulab-smu.github.io/clusterProfiler-book/chapter6.html

Answer 1

[Jianyu]

You can try gprofiler, the tutorial can be found on its website