allele frequencies for GWAS from 1000genomes or HRC
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2.4 years ago
mk19726 ▴ 40

I have GWAS summary results of a European population. the authors do not want to share the allele frequencies, they have suggested I get them from a reference panel e.g. 1000 genomes or HRC.

Looking at the website for 100genomes and HRC I'm not sure how I do this (I am new to this area having a clinical background).

Is there a panel I can download and merge with my SNPs to find the eaf?

All advice greatly appreciated.

gwas eaf summary data hrc 1000genomes • 593 views

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