Question: How To Build Gene Network Biology ?
gravatar for madkitty
8.6 years ago by
madkitty620 wrote:

I've seen wonderful gene networks recently published. Is there any way to do this from a list of gene ? What do I need ?

gene network biology • 2.0k views
ADD COMMENTlink modified 6.8 years ago by Biostar ♦♦ 20 • written 8.6 years ago by madkitty620

From a list of genes? No. From a list of genes with some kind of data that indicates the interactions between them? Yes.

ADD REPLYlink written 8.6 years ago by Neilfws49k

can you give us some example what you saw?

ADD REPLYlink written 8.6 years ago by Gjain5.5k
gravatar for
8.6 years ago by
European Union wrote:

As said Neilfws you need pairwise information, e.g.

-a tab separeted text file like this

gene1   interaction gene2
ABC1    2   BRCA2
ABC1    2   BRCA1
BRCA2   2   XRCC1

-a tool for graph visualization (e.g. cytoscape, graphviz...). In cytoscape you should import a new network from table/csv and setup source (gene1), destination (gene2) and interaction type (interaction) column from the wizard.

-look at the graph

p.s. I suggest at least reading the good cytoscape tutorial

ADD COMMENTlink modified 8.6 years ago • written 8.6 years ago by
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