When I run the following command in in interactive session in my HPC system, it seems to run fine. I let it go for a minute or so, which it does without errors, and then kill it, because it's not appropriate to run such job in an interactive session.
But when I submit it as a batch job, it crashes with the following error within less than 10 secs of starting.
bcftools view -S ^outgrouplist -o tem.vcf thevcf_raw_24apr2020.vcf 25812 Illegal instruction (core dumped) bcftools view -S ^outgrouplist -o tem.vcf thevcf_raw_24apr2020.vcf
I made sure that the output file doesn't already exist, because that's caused me errors in the past.