I am following the tutorial for CHIPSeeker at
https://hbctraining.github.io/Intro-to-ChIPseq/lessons/12_functional_analysis.html
Everything works fine, except when I run the enrichGO call to create an ego object. No matter what I do I get the following error:
ego <- enrichGO(gene = entrez,
+ keyType = "ENTREZID",
+ OrgDb = org.Mm.eg.db,
+ ont = "CC",
+ pAdjustMethod = "BH",
+ qvalueCutoff = 0.05,
+ readable = TRUE)
Error: database or disk is full
However, my disk is clearly not full (907 GB free), so something else must be going on. The KEGG analysis also described works perfectly. Appreciate any suggestions.
FYI: I am using a anaconda2 installation of R3.6.1 on an old ubuntu 12
Many programs use temporary disks, which may be different from where you do data analysis. I suggest you check that a disk holding /tmp directory is not full.