Dna database and analysis tool using hadoop
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19 months ago

Hello everyone, My name is Lokesh and i have to make a dna database and analysis tool using hadoop as my university project. Can anyone kindly tell me, what is the best method to store complete DNA sequences ( 3 billion base pairs approx.) in hadoop ecosystem? Any help will be greatly appreciated.

sequence sequencing • 268 views
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Dear Lokesh,

There were some discussions going on in the past, just two threads that you may find interesting:

Why is Hadoop not used a lot in bio-informatics?

Hadoop InputFormat for FASTA files?

etc.

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