Question

Alignment score in HMMER

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4.0 years ago

bbravi.bb • 0

Hello,

is there a way to get the alignment scores used by hmmalign (HMMER software)? Thanks

alignment HMM • 737 views

ADD COMMENT • link updated 4.0 years ago by Mensur Dlakic ★ 27k • written 4.0 years ago by bbravi.bb • 0

score 0 · Answer 1 · 2020-04-30

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Entering edit mode

4.0 years ago

Mensur Dlakic ★ 27k

hmmsearch scores sequences against HMMs, and produces an alignment that corresponds to the score. You can probably modify hmmalign code to print out the score, but it would be redundant.

ADD COMMENT • link 4.0 years ago by Mensur Dlakic ★ 27k