I was wondering if someone knows where i can find an up-to-date reference transcriptome from a mouse (version mm9).
It would be nice if there is one available in a FASTA format!
ucsc : http://genome.ucsc.edu/cgi-bin/hgTables?command=start
This is available through the Ensembl BioMart tool, where you can ask for all Mouse transcripts in FASTA format :
You can download mm9 (or NCBI build 37, according to UCSC) RNA fasta files from NCBI FTP archive folder
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