Reference genome for snpEff
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13 months ago
j.lunger18 ▴ 30

I'm using snpEff to annotate variants extracted from TCGA. I see that snpEff has a lot of different genome versions for annotation, and I figured I could just use hGRCh38, but I'm assuming I should probably use the same version that was used in TCGA. Does anyone know if snpEff has this version available? I couldn't seem to find it in the datasets. Thanks!

snpEff vcf assembly • 355 views
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