Tool:Slimmaker: Generating Short Linear Motifs From Sequences
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10.4 years ago

SLiMMaker (SLiM stands for Short, Linear Motif) is regular expression generator that takes as input sequences and creates from them a regular expression that matches all the inputs.

URL: http://bioware.soton.ac.uk/slimmaker.html

Here is an example:

Input:

QGTLESFFKR
QKRINEFFPR
QGRLDDFFKV
QSSLLSFFSK
QPTISRFFKK
QGRLDGFFQV
QRSIMSFFHP
QTTITSHFAK
QKTLYSFFSP
QKSIMSFFGK
QATLARFFTS
QQTLSSFFMG
QTTIEDFFGT
QVSITGFFQR
QTSMTDFYHS
QLRIDSFFRL
QSTLYSFFPK
QWKLLRDFDI

Output:

Q.[RST][IL].[DRS]FF
motif Tool • 1.4k views
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